NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224541_1006836

Scaffold Ga0224541_1006836


Overview

Basic Information
Taxon OID3300022521 Open in IMG/M
Scaffold IDGa0224541_1006836 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1226
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002376Metagenome / Metatranscriptome566Y

Sequences

Protein IDFamilyRBSSequence
Ga0224541_10068361F002376GGAMPVSHKLIRFARKSPRRLLHDLIRFARRSPHERAWIVRRYLGNWDWRVPRLGNDRTAYVIGLYGTGRGYINEVLLKNLGKRAKYFRETIRFHPGPTSMIYSGHATIKYVSRDQELPAVTSRILEAVRSGFADLIFINRHPLDSLLTNWIWWRTYLRDNFQIEGISQVYKNADDLGGVLEQNFLEFKSFAEGDPDFFAAVPGPRFLSFREFVEEAEIYLQSATLTLRLEDFMIDPLKEFSKIVEVMSVDIDLSRLRVAPPRTKAYGYLAVKEKVPRFRNFINELDAETKRRIEKIGYKVSA
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